pH/退火方式控制DNA纳米笼的选择性组装

叶超, 曹行行, 张荣荣

现代化工 ›› 2020, Vol. 40 ›› Issue (4) : 179 -183.

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现代化工 ›› 2020, Vol. 40 ›› Issue (4) : 179-183. DOI: 10.16606/j.cnki.issn0253-4320.2020.04.038
科研与开发

pH/退火方式控制DNA纳米笼的选择性组装

    叶超, 曹行行, 张荣荣
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Selective assembly of DNA nanocages controlled by pH/annealing

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摘要

通过调控溶液的pH、选择不同速率热退火方式,以四点星DNA分子瓦为建筑模块,根据沃森-克里克碱基互补配对原则和Hoogsteen氢键配对连接,选择性地组装成不同的DNA多面体结构。非变性聚丙烯酰胺凝胶电泳表征结果表明,在酸性条件(pH 5.5)及退火时间5.0 h下,分子瓦自组装成DNA变形四面体(tTET)结构;在中性条件(pH 8.0)及退火时间24.0 h下,自组装形成DNA八面体(OCT)结构。在中性条件(pH 8.0)下,只改变分子瓦黏性末端碱基的数目,直至形成不同数目的碱基对来产生不同强度的作用力,也能类似地组装成不同的DNA多面体结构。该结果也由非变性聚丙烯酰胺凝胶电泳进行了表征。

Abstract

By regulating pH value of the solution and selecting different speeds of thermal annealing methods,four-point-star DNA molecular tiles are selectively assembled into different DNA polyhedral structures according to Watson-Crick base complementary pairing principle and Hoogsteen hydrogen bond pairing connection.Non-denaturing polyacrylamide gel electrophoresis (PAGE) shows that the tiles can be self-assembled into a DNA transmutative tetrahedron (tTET) under acidic condition (pH=5.5) for 5.0 h of annealing.DNA octahedra (OCT) can be formed under neutral condition (pH=8.0) for 24.0 h of annealing.Going further and changing only the number of sticky end bases of tiles under neutral condition (pH=8.0),they can form different numbers of base pairs with different strengths,which can be similarly assembled into different DNA polyhedral structures.This result is also characterized by non-denaturing PAGE.

关键词

DNA / Hoogsteen氢键 / 退火方式 / pH / 选择性组装

Key words

DNA / Hoogsteen hydrogen bond / annealing mode / pH value / selective assembly

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pH/退火方式控制DNA纳米笼的选择性组装[J]. 现代化工, 2020, 40(4): 179-183 DOI:10.16606/j.cnki.issn0253-4320.2020.04.038

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